Fly Factor Survey

ChIPpeakAnno: a bioconductor package for annotating peaks identified from ChIP-seq, Chip-chip or any high-throuput experiments.

REDseq: Analysis of high-throughput sequencing data processed by restriction enzyme digestion.

Analyzing composition of ZFP sites

ZFN target site algorithm for identifying sites compatible with the Lawson-Wolfe modular assembly system

Genomesurveyor - implemented in gbrowse with Dme4

Zebrafish Genome Browser

General information regarding PGFE