Gene-Network-Builder

Project info
Project Name	Email
Binding sites
Transciption Factor Gene symbol of the TF	ChIP results List of gene symbols seperated by ';' OR Upload a text file
Expression Data
Gene expression results A matrix in this format or a text file with gene symbols	miRNAs expression profile Optional. CSV file with specific format
FoldChange>= Fold change cutoff for gene expression results	P.Value=< p.value cutoff for gene expression results
Resolve genes with multiple expression measurements Please select a method for determining the fold change of gene with multiple probes
Network options
Protein-DNA Interactions (PDIs) PDIs file is a windows comma separated value (csv) file. It is a from-to 2 column file. Click here to download the sample file. OR upload a customized PDIs	Depth of output network
Expand the gene list from the ChIP results with the selected PDIs	Tolerance Maximum number of nodes without expresion change detected in each path allowed
Do not keep miRNA if absent in the ChIP results or expression results	All the leaf nodes should be verified by expression results
Only keep the best path if multiple paths exist for a node	Include GO analysis